Filippo Geraci Ph.D

Journal papers

2022
		Andreini Paolo, Bonechi Simone, Bianchini Monica, Geraci Filippo MicroRNA signature for interpretable breast cancer classification with subtype clue Journal of Computational Mathematics and Data Science
		Federica Baccini, Monica Bianchini, Filippo Geraci Graph-Based Integration of Histone Modification Profiles Mathematics
		Federica Baccini, Filippo Geraci, Ginestra Bianconi Weighted simplicial complexes and their representation power of higher-order network data and topology Physical Review E

2021
		C. Schiano, M. Franzese, F. Geraci, M. Zanfardino, C. Maiello, V. Palmieri, A. Soricelli, V. Grimaldi, E. Coscioni, M. Salvatore, C. Napoli Machine learning and bioinformatics framework integration to potential familial DCM-related markers discovery Genes
		C. Caudai, A. Galizia, F. Geraci, L. Le Pera, V. Morea, E. Salerno, A Via, T. Colombo AI applications in Functional Genomics Computational and Structural Biotechnology Journal
		Filippo Geraci, Giovanni Manzini EZcount: An all-in-one software for microRNA expression quantification from NGS sequencing data Computers in Biology and Medicine

2020
		Filippo Geraci, Indrajit Saha, Monica Bianchini RNA-Seq analysis: methods, applications and challenges Frontiers in genetics

2018
		Loredana M. Genovese, Filippo Geraci, Lucia Corrado, Eleonora Mangano, Romina D'Aurizio, Roberta Bordoni, Marco Severgnini, Giovanni Manzini, Gianluca De Bellis, Sandra D'Alfonso, Marco Pellegrini A census of tandemly repeated polymorphic loci in genic regions through the comparative integration of human genome assemblies Frontiers in genetics
		Genovese, Loredana M, Geraci, Filippo Web Crawling and Processing with Limited Resources for Business Intelligence and Analytics Applications. Journal of Software
		Bhowmick, Shib Sankar, Saha, Indrajit, Bhattacharjee, Debotosh, Genovese, Loredana M, Geraci, Filippo Genome-wide analysis of NGS data to compile cancer-specific panels of miRNA biomarkers PloS one
		Loredana M. Genovese, Marco M. Mosca, Marco Pellegrini, Filippo Geraci Dot2dot: accurate whole-genome tandem repeats discovery Bioinformatics

2017
		Russo, F., Di Bella, S., Vannini, F., Berti, G., Scoyni, F., Cook, H. V., ... & Geraci, F. & others miRandola 2017: a curated knowledge base of non-invasive biomarkers Nucleic acids research

2016
		Pellegrini, Marco, Baglioni, Miriam, Geraci, Filippo Protein complex prediction for large protein protein interaction networks with the Core\&Peel Method BMC Bioinformatics

2015
		Baglioni, Miriam, Russo, Francesco, Geraci, Filippo, Rizzo, Milena, Rainaldi, Giuseppe, Pellegrini, Marco A New Method for Discovering Disease-Specific MiRNA-Target Regulatory Networks PLoS ONE

2014
		Miriam Bagioni, Filippo Geraci, Marco Pellegrini Ernesto Lastres Fast Exact and Approximate Computation of Betweenness Centrality in Social Networks State of the Art Applications of Social Network Analysis

2013
		Filippo Geraci, Marco Maggini A Fast Method for Web Template Extraction via a Multi-sequence Alignment Approach Knowledge Discovery, Knowledge Engineering and Knowledge Management
		Filippo Geraci, Maurizio Martinelli, Marco Pellegrini, Michela Serrecchia A Framework to evaluate Information Quality in Public Administration Websites Pacific Asia Journal of the Association for Information Systems

2011
		Filippo Geraci, Marco Pellegrini ReHap: A Framework for Single Individual Haplotyping from Next-Generation Sequencing Data Biomedical Engineering Systems and Technologies (Springer)

2010
		Filippo Geraci A comparison of several algorithms for the single individual SNP haplotyping reconstruction problem Bioinformatics

2009
		Furini, Marco, Geraci, Filippo, Montangero, Manuela, Pellegrini, Marco STIMO: STIll and MOving video storyboard for the web scenario Multimedia Tools and Applications
		Yon Dourisboure, Filippo Geraci, Marco Pellegrini Extraction and classification of dense implicit communities in the Web graph ACM Transactions on the Web

2008
		Filippo Geraci, Mauro Leoncini, Manuela Montangero, Marco Pellegrini, M. Elena Renda K-Boost: a Scalable Algorithm for High-Quality Clustering of Microarray Gene Expression Data Journal of Computaional Biology
		Loredana M. Genovese, Filippo Geraci, Marco Pellegrini SpeedHap: An Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage EEE/ACM Transactions on Computational Biology and Bioinformatics
		Filippo Geraci, Marco Pellegrini, M. Elena Renda AMIC@: All MIcroarray Clusterings @ Once Nucleic Acids Research, Web Server Issue

2007
		Filippo Geraci, Marco Maggini, Marco Pellegrini, Fabrizio Sebastiani Cluster Generation and Cluster Labelling for Web Snippets:A Fast and Accurate Hierarchical Solution Internet Mathematics

Conference proceedings

2019
		Geraci, Filippo, Massidda, Riccardo, Pisanti, Nadia Technology and Species Independent Simulation of Sequencing Data and Genomic Variants 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE)

2017
		Filippo Geraci, Tiziano Papini Approximating Multi-Class Text Classification via Automatic Generation of Training Examples 18th International Conference on Computational Linguistics and Intelligent Text Processing
		Daniele Di Sarli, Filippo Geraci GFS:a Graph-based File System Enhanced with Semantic Features International Conference on Information System and Data Mining

2015
		Indrajit Saha, Shib Sankar Bhowmick, Filippo Geraci, Marco Pellegrini, Debotosh Bhattacharjee, Ujjwal Maulik, Dariusz Plewczynski Analysis of Next-Generation Sequencing data of miRNA for the Prediction of Breast Cancer International Conference on Swarm, Evolutionary and Memetic Computing (SEMCCO)
		Pinaki Bhaskar, Marina Buzzi, Filippo Geraci, Marco Pellegrini From Literature to Knowledge: Exploiting PubMed to Answer Biomedical Questions in Natural Language Information Technology in Bio- and Medical Informatics {ITBAM
		Geraci, Filippo Identification of Web Spam through Clustering of Website Structures Proceedings of the 24th International Conference on World Wide Web Companion

2013
		M. Baglioni, S. Pieroni, F. Geraci, F. Mariani, S. Molinaro, M. Pellegrini, E. Lastres A New Framework for Distilling Higher Quality Information from Health Data via Social Network Analysis}. IEEE 13th International Conference on Data Mining Workshops (ICDMW)

2012
		Filippo Geraci, Maurizio Martinelli, Marco Pellegrini, Michela Serrecchia A Framework to Evaluate Information Quality in Public Adimistration Websites. IADIS International Conference on Internet Technologies & Society
		Miriam Baglioni, Filippo Geraci, Marco Pellegrini, Erntesto Lastres Fast Exact Computation of Betweenness Centrality in Social Networks. IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM 2012)

2011
		Michele Budinich, Bruno Codenotti, Filippo Geraci, Marco Pellegrini Estimating Click Through Rates for Adwords using Public Data Conference on Communication, Science & Information Engineering (CCSIE 2011)
		Filippo Geraci, Marco Maggini A Multi-sequence Alignment Algorithm for Web Template Detection International Conference on Knowledge Discovery and Information Retrieval (KDIR)
		Claudio Felicioli, Filippo Geraci, Marco Pellegrini Medium sized crawling made fast and easy through Lumbricus webis. International Conference on Machine Learning and Cybernetics (ICMLC)

2010
		Filippo Geraci, Marco Pellegrini ReHap: an Integrated System for the Haplotype Assembly Problem from Shotgun Sequencing Data Proceedings of Bionformatics 2010, INSTICC
		M. Budinich, B. Codenotti, F. Geraci, M. Pellegrini On the benefits of keyword spreading in sponsored search auctions: an experimental analysis Proceedings of the 11th International Conference on Electronic Commerce and Web Technologies (EC-Web)

2009
		Filippo Geraci, Marco Pellegrini, M. Elena Renda An Efficient Combinatorial Approach for Solving the DNA Motif Finding Problem Proceedings of the 9th International Conference on Intelligent Systems Design and Applications (ISDA'09)

2008
		Filippo Geraci, Marco Pellegrini Dynamic User-Defined Similarity Searching in Semi-Structured Text Retrieval INFOSCALE
		Marco Furini, Filippo Geraci, Manuela Montangero, Marco Pellegrini On Using Clustering Algorithms to Produce Video Abstracts for the Web Scenario IEEE CCNC

2007
		Loredana M. Genovese, Filippo Geraci, Marco Pellegrini A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage WABI
		Filippo Geraci, Mauro Leoncini, Manuela Montangero, Marco Pellegrini, M. Elena Renda FPF-SB: A Scalable Algorithm for Microarray Gene Expression Data Clustering HCI (12)
		Marco Furini, Filippo Geraci, Manuela Montangero, Marco Pellegrini VISTO: visual storyboard for web video browsing CIVR '07: Proceedings of the 6th ACM international conference on Image and video retrieval
		Yon Dourisboure, Filippo Geraci, Marco Pellegrini Extraction and classification of dense communities in the web WWW '07: Proceedings of the 16th international conference on World Wide Web

2006
		Filippo Geraci, Marco Pellegrini, Paolo Pisati, Fabrizio Sebastiani A scalable algorithm for high-quality clustering of web snippets SAC '06: Proceedings of the 2006 ACM symposium on Applied computing
		Filippo Geraci, Marco Pellegrini, Marco Maggini, Fabrizio Sebastiani Cluster Generation and Cluster Labelling for Web Snippets: A Fast and Accurate Hierarchical Solution String Processing and Information Retrieval

2005
		Filippo Geraci, Marco Pellegrini, Paolo Pisati, Luigi Rizzo Packet classification via improved space decomposition techniques INFOCOM 2005
		Filippo Geraci, Roberto Grossi Distilling Router Data Analysis for Faster and Simpler Dynamic IP Lookup Algorithms Experimental and Efficient Algorithm

Ph.D thesis

2008
		Filippo Geraci: Fast Clustering for Web Information Retrieval

Master thesis

2003
		Filippo Geraci: Studio di nuovi metodi statici e dinamici per il problema di "IP address lookup" nell'istradamento efficiente dei pacchetti in internet